| Alignment of AA369485_3_3 to gnl|alu|HSU14573 |
59 ggccgaggtgggtggatcgcctgagatcaggagttcaagaccagtctggccaacatggtg 118
|||||||| ||||||||| |||||| |||||||||| ||||||| |||||||||||||||
45 ggccgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtg 104
119 aaaccccatctctactaaaaatacaaaaattggccaggcgtggtggcatgcacctgttgt 178
||||||| ||||||||||||||||||||||| ||| ||||||||||| || ||||| |
105 aaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaat 164
179 cccagctgctctggaggctgagg 201
||||||| ||| |||||||||||
165 cccagctactcgggaggctgagg 187
| Site name: | AA369485_3_38 |
|---|
| Site flanking region: | TGGTTTTTAAGTTCAGAGATATGGGCCGAGGTGGGTGGATCGCCTGAGATCAGGAGTTCAAGACCAGTCT
GGCCAACATGGTGAAACCCCATCTCTACTAaAAATACAAAAATTGGCCAGGCGTGGTGGCATGCACCTGT
TGTCCCAGCTGCTCTGGAGGCTGAGGTAGGAGAATCACTTGAACCCAGTAGGCGGAAGTTG |
|---|
| Alignment of AA369485_3_38 to gnl|alu|HSU14573 |
24 ggccgaggtgggtggatcgcctgagatcaggagttcaagaccagtctggccaacatggtg 83
|||||||| ||||||||| |||||| |||||||||| ||||||| |||||||||||||||
45 ggccgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtg 104
84 aaaccccatctctactaaaaatacaaaaattggccaggcgtggtggcatgcacctgttgt 143
||||||| ||||||||||||||||||||||| ||| ||||||||||| || ||||| |
105 aaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaat 164
144 cccagctgctctggaggctgaggtaggagaatcacttgaacccagtaggcggaagttg 201
||||||| ||| ||||||||||| ||||||||| ||||||||| | ||||||| ||||
165 cccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttg 222
| Site name: | AA369485_3_41 |
|---|
| Site flanking region: | TTTTTAAGTTCAGAGATATGGGCCGAGGTGGGTGGATCGCCTGAGATCAGGAGTTCAAGACCAGTCTGGC
CAACATGGTGAAACCCCATCTCTACTAAAAaTACAAAAATTGGCCAGGCGTGGTGGCATGCACCTGTTGT
CCCAGCTGCTCTGGAGGCTGAGGTAGGAGAATCACTTGAACCCAGTAGGCGGAAGTTGCAG |
|---|
| Alignment of AA369485_3_41 to gnl|alu|HSU14573 |
21 ggccgaggtgggtggatcgcctgagatcaggagttcaagaccagtctggccaacatggtg 80
|||||||| ||||||||| |||||| |||||||||| ||||||| |||||||||||||||
45 ggccgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtg 104
81 aaaccccatctctactaaaaatacaaaaattggccaggcgtggtggcatgcacctgttgt 140
||||||| ||||||||||||||||||||||| ||| ||||||||||| || ||||| |
105 aaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaat 164
141 cccagctgctctggaggctgaggtaggagaatcacttgaacccagtaggcggaagttgca 200
||||||| ||| ||||||||||| ||||||||| ||||||||| | ||||||| ||||||
165 cccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgca 224
201 g 201
|
225 g 225
| Site name: | AA369485_3_46 |
|---|
| Site flanking region: | AAGTTCAGAGATATGGGCCGAGGTGGGTGGATCGCCTGAGATCAGGAGTTCAAGACCAGTCTGGCCAACA
TGGTGAAACCCCATCTCTACTAAAAATACAaAAATTGGCCAGGCGTGGTGGCATGCACCTGTTGTCCCAG
CTGCTCTGGAGGCTGAGGTAGGAGAATCACTTGAACCCAGTAGGCGGAAGTTGCAGTGAGC |
|---|
| Alignment of AA369485_3_46 to gnl|alu|HSU14573 |
16 ggccgaggtgggtggatcgcctgagatcaggagttcaagaccagtctggccaacatggtg 75
|||||||| ||||||||| |||||| |||||||||| ||||||| |||||||||||||||
45 ggccgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtg 104
76 aaaccccatctctactaaaaatacaaaaattggccaggcgtggtggcatgcacctgttgt 135
||||||| ||||||||||||||||||||||| ||| ||||||||||| || ||||| |
105 aaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaat 164
136 cccagctgctctggaggctgaggtaggagaatcacttgaacccagtaggcggaagttgca 195
||||||| ||| ||||||||||| ||||||||| ||||||||| | ||||||| ||||||
165 cccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgca 224
196 gtgagc 201
||||||
225 gtgagc 230
| Site name: | AA369485_3_48 |
|---|
| Site flanking region: | GTTCAGAGATATGGGCCGAGGTGGGTGGATCGCCTGAGATCAGGAGTTCAAGACCAGTCTGGCCAACATG
GTGAAACCCCATCTCTACTAAAAATACAAAaATTGGCCAGGCGTGGTGGCATGCACCTGTTGTCCCAGCT
GCTCTGGAGGCTGAGGTAGGAGAATCACTTGAACCCAGTAGGCGGAAGTTGCAGTGAGCTG |
|---|
| Alignment of AA369485_3_48 to gnl|alu|HSU14573 |
14 ggccgaggtgggtggatcgcctgagatcaggagttcaagaccagtctggccaacatggtg 73
|||||||| ||||||||| |||||| |||||||||| ||||||| |||||||||||||||
45 ggccgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtg 104
74 aaaccccatctctactaaaaatacaaaaattggccaggcgtggtggcatgcacctgttgt 133
||||||| ||||||||||||||||||||||| ||| ||||||||||| || ||||| |
105 aaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaat 164
134 cccagctgctctggaggctgaggtaggagaatcacttgaacccagtaggcggaagttgca 193
||||||| ||| ||||||||||| ||||||||| ||||||||| | ||||||| ||||||
165 cccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgca 224
194 gtgagc 199
||||||
225 gtgagc 230
| Site name: | AA369485_3_56 |
|---|
| Site flanking region: | ATATGGGCCGAGGTGGGTGGATCGCCTGAGATCAGGAGTTCAAGACCAGTCTGGCCAACATGGTGAAACC
CCATCTCTACTAAAAATACAAAAATTGGCCaGGCGTGGTGGCATGCACCTGTTGTCCCAGCTGCTCTGGA
GGCTGAGGTAGGAGAATCACTTGAACCCAGTAGGCGGAAGTTGCAGTGAGCTGAAATTGTG |
|---|
| Alignment of AA369485_3_56 to gnl|alu|HSU14573 |
6 ggccgaggtgggtggatcgcctgagatcaggagttcaagaccagtctggccaacatggtg 65
|||||||| ||||||||| |||||| |||||||||| ||||||| |||||||||||||||
45 ggccgaggcgggtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtg 104
66 aaaccccatctctactaaaaatacaaaaattggccaggcgtggtggcatgcacctgttgt 125
||||||| ||||||||||||||||||||||| ||| ||||||||||| || ||||| |
105 aaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaat 164
126 cccagctgctctggaggctgaggtaggagaatcacttgaacccagtaggcggaagttgca 185
||||||| ||| ||||||||||| ||||||||| ||||||||| | ||||||| ||||||
165 cccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgca 224
186 gtgagc 191
||||||
225 gtgagc 230
| Site name: | AA369485_3_72 |
|---|
| Site flanking region: | GTGGATCGCCTGAGATCAGGAGTTCAAGACCAGTCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAA
TACAAAAATTGGCCAGGCGTGGTGGCATGCaCCTGTTGTCCCAGCTGCTCTGGAGGCTGAGGTAGGAGAA
TCACTTGAACCCAGTAGGCGGAAGTTGCAGTGAGCTGAAATTGTGCTATTGCACTCCAGCC |
|---|
| Alignment of AA369485_3_72 to gnl|alu|HSU14573 |
1 gtggatcgcctgagatcaggagttcaagaccagtctggccaacatggtgaaaccccatct 60
||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||| |||
56 gtggatcacctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtct 115
61 ctactaaaaatacaaaaattggccaggcgtggtggcatgcacctgttgtcccagctgctc 120
|||||||||||||||||||| ||| ||||||||||| || ||||| |||||||| |||
116 ctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaatcccagctactc 175
121 tggaggctgaggtaggagaatcacttgaacccagtaggcggaagttgcagtgagctgaaa 180
||||||||||| ||||||||| ||||||||| | ||||||| |||||||||||| || |
176 gggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccgaga 235
181 ttgtgctattgcactccagcc 201
| | || | ||||||||||||
236 tcgcgccactgcactccagcc 256
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | NM015377,AB020696 |
|---|
| Multiple alignment | ACCAGTCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTGGCCAGGC Chrom.20 NT_011362
ACCGGTCTGGCCAACATGGTGAAACCCCATCTCTACTAGAAGTACAGAGATTGGCCGGGC NM015377
ACCGGTCTGGCCAACATGGTGAAACCCCATCTCTACTAGAAGTACAGAGATTGGCCGGGC AB020696
GTGGTGGCATGCACCTGTTGTCCCAGCTGCTCTGGAGGCTGAGGTAGGAGAAT Chrom.20 NT_011362
GTGGTGGCATGCGCCTGTTGTCCCAGCTGCTCTGGAGGCTGAGGCAGGAGAAT NM015377
GTGGTGGCATGCGCCTGTTGTCCCAGCTGCTCTGGAGGCTGAGGCAGGAGAAT AB020696
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| Sites: | AA369485_3_740 AA369485_3_776 AA369485_3_779 AA369485_4_3 AA369485_4_12 AA369485_4_37 AA369485_4_71 Cytogenetic band: 20q11.22 |
|---|
| Site name: | AA369485_3_740 |
|---|
| Site flanking region: | CCAGGCTTGAGTGCAATGACTCAATCTCGGCTCACTGTAACCTCCGCCTCCTGGGTTCAAACAATTCTGT
CTCTGCCTCCCAAGTAGCTGGGATTAAGGCaCCTGCCACCATGCCCGGCTAATTTTTGTATTTTTTAGTA
GAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCCGACCTCAAGTGATCCGC |
|---|
| Alignment of AA369485_3_740 to gnl|alu|HSU14573 |
1 ccaggcttgagtgcaatgactcaatctcggctcactgtaacctccgcctcctgggttcaa 60
||||||| ||||||| || | | |||||||||||||| ||||||||||||| ||||||||
259 ccaggctggagtgcagtggcgcgatctcggctcactgcaacctccgcctcccgggttcaa 200
61 acaattct---gtctctgcctcccaagtagctgggatta-aggcacctgccaccatgccc 116
| ||||| | ||| ||||||| |||||||||||||| |||| || ||||||| ||||
199 gcgattctcctgcctcagcctcccgagtagctgggattacaggcgcccgccaccacgccc 140
117 ggctaatttttgtattttttagtagagacggggtttcaccatgttggccaggctggtctc 176
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
139 ggctaatttttgtattttt-agtagagacggggtttcaccatgttggccaggctggtctc 80
177 gaactcccgacctcaagtgatcc 199
||||||| ||||||| |||||||
79 gaactcctgacctcaggtgatcc 57
| Site name: | AA369485_3_776 |
|---|
| Site flanking region: | GTAACCTCCGCCTCCTGGGTTCAAACAATTCTGTCTCTGCCTCCCAAGTAGCTGGGATTAAGGCACCTGC
CACCATGCCCGGCTAATTTTTGTATTTTTTaGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTC
GAACTCCCGACCTCAAGTGATCCGCCCACCTTGGCCTCCCAAAGTGTTAGGATTACAGGCG |
|---|
| Alignment of AA369485_3_776 to gnl|alu|HSU14573 |
3 aacctccgcctcctgggttcaaacaattct---gtctctgcctcccaagtagctgggatt 59
||||||||||||| |||||||| | ||||| | ||| ||||||| |||||||||||||
221 aacctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggatt 162
60 a-aggcacctgccaccatgcccggctaatttttgtattttttagtagagacggggtttca 118
| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||
161 acaggcgcccgccaccacgcccggctaatttttgtattttt-agtagagacggggtttca 102
119 ccatgttggccaggctggtctcgaactcccgacctcaagtgatccgcccaccttggcctc 178
||||||||||||||||||||||||||||| ||||||| ||||||| ||| ||| ||||||
101 ccatgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctc 42
179 ccaaagtgttaggattacaggcg 201
|||||||| | ||||||||||||
41 ccaaagtgctgggattacaggcg 19
| Site name: | AA369485_3_779 |
|---|
| Site flanking region: | ACCTCCGCCTCCTGGGTTCAAACAATTCTGTCTCTGCCTCCCAAGTAGCTGGGATTAAGGCACCTGCCAC
CATGCCCGGCTAATTTTTGTATTTTTTAGTaGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAA
CTCCCGACCTCAAGTGATCCGCCCACCTTGGCCTCCCAAAGTGTTAGGATTACAGGCGTGA |
|---|
| Alignment of AA369485_3_779 to gnl|alu|HSU14573 |
1 acctccgcctcctgggttcaaacaattct---gtctctgcctcccaagtagctgggatta 57
|||||||||||| |||||||| | ||||| | ||| ||||||| ||||||||||||||
220 acctccgcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggatta 161
58 -aggcacctgccaccatgcccggctaatttttgtattttttagtagagacggggtttcac 116
|||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||||
160 caggcgcccgccaccacgcccggctaatttttgtattttt-agtagagacggggtttcac 101
117 catgttggccaggctggtctcgaactcccgacctcaagtgatccgcccaccttggcctcc 176
|||||||||||||||||||||||||||| ||||||| ||||||| ||| ||| |||||||
100 catgttggccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcc 41
177 caaagtgttaggattacaggcgtga 201
||||||| | |||||||||||||||
40 caaagtgctgggattacaggcgtga 16
| Site name: | AA369485_4_3 |
|---|
| Site flanking region: | TCAAACAATTCTGTCTCTGCCTCCCAAGTAGCTGGGATTAAGGCACCTGCCACCATGCCCGGCTAATTTT
TGTATTTTTTAGTAGAGACGGGGTTTCACCaTGTTGGCCAGGCTGGTCTCGAACTCCCGACCTCAAGTGA
TCCGCCCACCTTGGCCTCCCAAAGTGTTAGGATTACAGGCGTGAGCCACCGCGCCTGGCCA |
|---|
| Alignment of AA369485_4_3 to gnl|alu|HSU14573 |
19 gcctcccaagtagctgggatta-aggcacctgccaccatgcccggctaatttttgtattt 77
||||||| |||||||||||||| |||| || ||||||| |||||||||||||||||||||
182 gcctcccgagtagctgggattacaggcgcccgccaccacgcccggctaatttttgtattt 123
78 tttagtagagacggggtttcaccatgttggccaggctggtctcgaactcccgacctcaag 137
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
122 tt-agtagagacggggtttcaccatgttggccaggctggtctcgaactcctgacctcagg 63
138 tgatccgcccaccttggcctcccaaagtgttaggattacaggcgtgagccaccgcgcctg 197
|||||| ||| ||| |||||||||||||| | |||||||||||||||||||||||||| |
62 tgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccg 3
198 gcc 200
|||
2 gcc 0
| Site name: | AA369485_4_12 |
|---|
| Site flanking region: | TCTGTCTCTGCCTCCCAAGTAGCTGGGATTAAGGCACCTGCCACCATGCCCGGCTAATTTTTGTATTTTT
TAGTAGAGACGGGGTTTCACCATGTTGGCCaGGCTGGTCTCGAACTCCCGACCTCAAGTGATCCGCCCAC
CTTGGCCTCCCAAAGTGTTAGGATTACAGGCGTGAGCCACCGCGCCTGGCCACATCTCTGT |
|---|
| Alignment of AA369485_4_12 to gnl|alu|HSU14573 |
10 gcctcccaagtagctgggatta-aggcacctgccaccatgcccggctaatttttgtattt 68
||||||| |||||||||||||| |||| || ||||||| |||||||||||||||||||||
182 gcctcccgagtagctgggattacaggcgcccgccaccacgcccggctaatttttgtattt 123
69 tttagtagagacggggtttcaccatgttggccaggctggtctcgaactcccgacctcaag 128
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
122 tt-agtagagacggggtttcaccatgttggccaggctggtctcgaactcctgacctcagg 63
129 tgatccgcccaccttggcctcccaaagtgttaggattacaggcgtgagccaccgcgcctg 188
|||||| ||| ||| |||||||||||||| | |||||||||||||||||||||||||| |
62 tgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccg 3
189 gcc 191
|||
2 gcc 0
| Site name: | AA369485_4_37 |
|---|
| Site flanking region: | GGATTAAGGCACCTGCCACCATGCCCGGCTAATTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCATGT
TGGCCAGGCTGGTCTCGAACTCCCGACCTCaAGTGATCCGCCCACCTTGGCCTCCCAAAGTGTTAGGATT
ACAGGCGTGAGCCACCGCGCCTGGCCACATCTCTGTGTTTAACATCACCTTGGTACCTTGA |
|---|
| Alignment of AA369485_4_37 to gnl|alu|HSU14574 |
15 gccaccatgcccggctaatttttgtattttttagtagagacggggtttcaccatgttggc 74
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
151 gccaccacgcccggctaatttttgtattttt-agtagagacggggtttcaccatgttggc 92
75 caggctggtctcgaactcccgacctcaagtgatccgcccaccttggcctcccaaagtgtt 134
||||||||||||||||||| ||||||| ||||||||||| ||| |||||||||||||| |
91 caggctggtctcgaactcctgacctcaggtgatccgcccgcctcggcctcccaaagtgct 32
135 aggattacaggcgtgagccaccgcgcctggcc 166
|||||||||||||||||||||||||| ||||
31 gggattacaggcgtgagccaccgcgcccggcc 0
| Site name: | AA369485_4_71 |
|---|
| Site flanking region: | TTTGTATTTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCCGACCTCAAGT
GATCCGCCCACCTTGGCCTCCCAAAGTGTTaGGATTACAGGCGTGAGCCACCGCGCCTGGCCACATCTCT
GTGTTTAACATCACCTTGGTACCTTGAGATTGGCCACAGTGGGAGGATTTACAGCATAAAA |
|---|
| Alignment of AA369485_4_71 to gnl|alu|HSU14574 |
8 tttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcccgacctca 67
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
125 tttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcctgacctca 66
68 agtgatccgcccaccttggcctcccaaagtgttaggattacaggcgtgagccaccgcgcc 127
||||||||||| ||| |||||||||||||| | ||||||||||||||||||||||||||
65 ggtgatccgcccgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgcgcc 6
128 tggcc 132
||||
5 cggcc 1
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | NM015377,BE064593,BE064538,AB020696 |
|---|
| Multiple alignment | ACAATTCTGTCTCTGCCTCCCAAGTAGCTGGGATTAAGGCACCTGCCACCATGCCCGGCT Chrom.20 NT_011362
ACAATTCTGTCTCTGCCTCCCAAGTAGCTGGGATTAAGGCGCCTGCCACCATGCCCGGCT NM015377
ACAATTCTGTCTCTGCCTCCCAAGTAGCTGGGATTAAGACACCTGCCACCATGCCCGGCT BE064593
ACAATTCTGTCTCTGCCTCCCAAGTAGCTGGGATTAAGGCACCTGCCACCATGCCCGGCT BE064538
ACAATTCTGTCTCTGCCTCCCAAGTAGCTGGGATTAAGGCGCCTGCCACCATGCCCGGCT AB020696
AATTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC Chrom.20 NT_011362
AATTTTTGTATTTTTTGGTGGAGACGGGGTTTCACCGTGTTGGCCGGGCTGGTCTCGAAC NM015377
AATTTTTGTATTTTTTAGTGGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC BE064593
AATTTTTGTATTTTTTAGTGGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAAC BE064538
AATTTTTGTATTTTTTGGTGGAGACGGGGTTTCACCGTGTTGGCCGGGCTGGTCTCGAAC AB020696
TCCCGACCTCAAGTGATCCGCCCACCTTGGCCTCCCAAAGTGTTAGGATTACAGGCGTGA Chrom.20 NT_011362
TCCCGACCTCAAGTGATCCGCCCACCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGA NM015377
TCCCGACCTCGAGTGATCCGCCCACCTTGGCCTCCCAAAGTGTTAGGATTACAGGCGTGA BE064593
TCCCGACCTCGAGTGATCCGCCCACCTTGGCCTCCCAAAGTGTTAGGATTACAGGCGTGA BE064538
TCCCGACCTCAAGTGATCCGCCCACCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGA AB020696
GCCACCGCGCCTGGCCACATCTCTG Chrom.20 NT_011362
GCCACCGCGCCTGGCCACATCTCTG NM015377
GCCACCGCGCCTGGCCACATCTCTG BE064593
GCCACCGCGCCTGGCCACATCTCTG BE064538
GCCACCGCGCCTGGCCACATCTCTG AB020696
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