| Alignment of AA343986_21_17 to gnl|alu|HSU14574 |
87 gggcccggtggctcatgcctgtaatcccagcactttgggaggccg--gtgggcagatca- 143
|||| |||||||||| ||||||||||||||||||||||||||||| | |||| |||||
5 gggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcac 64
144 -tgaggtcaggagttcgagaccagcctgaccatcatggtgaaacctcatctccactaaa 201
||||||||||||||||||||||||||| ||| |||||||||||| | |||| ||||||
65 ctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaa 123
| Site name: | AA343986_21_26 |
|---|
| Site flanking region: | ATGTTCTTTTAAAGATCAAATTATCCATGAAATTATAGCCAGTTTAAAATGAATTATTTTAAAAAAAATT
TCTGGCTGGGCCCGGTGGCTCATGCCTGTAaTCCCAGCACTTTGGGAGGCCGGTGGGCAGATCATGAGGT
CAGGAGTTCGAGACCAGCCTGACCATCATGGTGAAACCTCATCTCCACTAAAAATACAAAA |
|---|
| Alignment of AA343986_21_26 to gnl|alu|HSU14574 |
78 gggcccggtggctcatgcctgtaatcccagcactttgggaggccg--gtgggcagatca- 134
|||| |||||||||| ||||||||||||||||||||||||||||| | |||| |||||
5 gggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcac 64
135 -tgaggtcaggagttcgagaccagcctgaccatcatggtgaaacctcatctccactaaaa 193
||||||||||||||||||||||||||| ||| |||||||||||| | |||| |||||||
65 ctgaggtcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaa 124
194 atacaaaa 201
||||||||
125 atacaaaa 132
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | NM014898,AB023178 |
|---|
| Multiple alignment | GCTGGGCCCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGGTGGGCAGATCA Chrom.19 NT_011109
GCTGGGCCCGGTGGCTCGTGCCTGTAGTCCCAGCACTTTGGGAGGCCGGTGGGCAGATCA NM014898
GCTGGGCCCGGTGGCTCGTGCCTGTAGTCCCAGCACTTTGGGAGGCCGGTGGGCAGATCA AB023178
TGAGGTC Chrom.19 NT_011109
TGAGGTC NM014898
TGAGGTC AB023178
|
|
|
|
|
|
|
|
|
|
| Sites: | AA343986_21_112 AA343986_21_121 Cytogenetic band: 19q13.13 |
|---|
| Site name: | AA343986_21_112 |
|---|
| Site flanking region: | GGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGGTGGGCAGATCATGAGGTCAGGAGTTCGAGACCA
GCCTGACCATCATGGTGAAACCTCATCTCCaCTAAAAATACAAAAATTAGCCAGGCGTGGTCACATGCGC
CTGTAATCCCAGCTACTCGGGCAGCTGAGACAGGAGAATCACTTGAACCCAGGAGGCAGAG |
|---|
| Alignment of AA343986_21_112 to gnl|alu|HSU14574 |
1 ggctcatgcctgtaatcccagcactttgggaggccg--gtgggcagatca--tgaggtca 56
|||||| ||||||||||||||||||||||||||||| | |||| ||||| ||||||||
14 ggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtca 73
57 ggagttcgagaccagcctgaccatcatggtgaaacctcatctccactaaaaatacaaaaa 116
||||||||||||||||||| ||| |||||||||||| | |||| ||||||||||||||||
74 ggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaa 133
117 ttagccaggcgtggtcacatgcgcctgtaatcccagctactcgggcagctgagacaggag 176
|||||| |||||||| | ||||||||||||||||||||||||| |||||| ||||||
134 ttagccgggcgtggtggcgcgcgcctgtaatcccagctactcgggaggctgaggcaggag 193
177 aatcacttgaacccaggaggc 197
|||| ||||||||| ||||||
194 aatcgcttgaacccgggaggc 214
| Site name: | AA343986_21_121 |
|---|
| Site flanking region: | CTGTAATCCCAGCACTTTGGGAGGCCGGTGGGCAGATCATGAGGTCAGGAGTTCGAGACCAGCCTGACCA
TCATGGTGAAACCTCATCTCCACTAAAAATaCAAAAATTAGCCAGGCGTGGTCACATGCGCCTGTAATCC
CAGCTACTCGGGCAGCTGAGACAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTG |
|---|
| Alignment of AA343986_21_121 to gnl|alu|HSU14574 |
1 ctgtaatcccagcactttgggaggccg--gtgggcagatca--tgaggtcaggagttcga 56
||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||
23 ctgtaatcccagcactttgggaggccgaggcgggcggatcacctgaggtcaggagttcga 82
57 gaccagcctgaccatcatggtgaaacctcatctccactaaaaatacaaaaattagccagg 116
|||||||||| ||| |||||||||||| | |||| |||||||||||||||||||||| ||
83 gaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagccggg 142
117 cgtggtcacatgcgcctgtaatcccagctactcgggcagctgagacaggagaatcacttg 176
|||||| | ||||||||||||||||||||||||| |||||| |||||||||| ||||
143 cgtggtggcgcgcgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttg 202
177 aacccaggaggcagaggttgcagtg 201
||||| |||||| ||||||||||||
203 aacccgggaggcggaggttgcagtg 227
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | NM014898,AB023178 |
|---|
| Multiple alignment | TTCGAGACCAGCCTGACCATCATGGTGAAACCTCATCTCCACTAAAAATACAAAAATTAG Chrom.19 NT_011109
TTTGAGACCAGCCTGACCATCATGGTGAAACCTCATCTCCGCTAAAAATGCAAAAATTAG NM014898
TTTGAGACCAGCCTGACCATCATGGTGAAACCTCATCTCCGCTAAAAATGCAAAAATTAG AB023178
CCAGGCGTGGTCACATGCGCCTGTAATCCC Chrom.19 NT_011109
CCAGGCGTGGTCACATGCGCCTGTAATCCC NM014898
CCAGGCGTGGTCACATGCGCCTGTAATCCC AB023178
|
|
|
|
|
|
|
|
|
|
| Sites: | AA343986_21_197 AA343986_21_198 AA343986_21_202 Cytogenetic band: 19q13.13 |
|---|
| Site name: | AA343986_21_197 |
|---|
| Site flanking region: | TGAAACCTCATCTCCACTAAAAATACAAAAATTAGCCAGGCGTGGTCACATGCGCCTGTAATCCCAGCTA
CTCGGGCAGCTGAGACAGGAGAATCACTTGaACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGCC
ATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTATCTCAAAGAAAAAAAGAAAATTTC |
|---|
| Alignment of AA343986_21_197 to gnl|alu|HSU14573 |
1 tgaaacctcatctccactaaaaatacaaaaattagccaggcgtggtcacatgcgcctgta 60
||||||| | |||| |||||||||||||||||||||| |||||||| | |||||||||
103 tgaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgta 162
61 atcccagctactcgggcagctgagacaggagaatcacttgaacccaggaggcagaggttg 120
|||||||||||||||| |||||| |||||||||| ||||||||| |||||| |||||||
163 atcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttg 222
121 cagtgagccgagatcacgccattgcactccagcctgggcaacaagagcaaaactctatct 180
||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||
223 cagtgagccgagatcgcgccactgcactccagcctgggcaacaagagcgaaactccgtct 282
181 caaa 184
||||
283 caaa 286
| Site name: | AA343986_21_198 |
|---|
| Site flanking region: | GAAACCTCATCTCCACTAAAAATACAAAAATTAGCCAGGCGTGGTCACATGCGCCTGTAATCCCAGCTAC
TCGGGCAGCTGAGACAGGAGAATCACTTGAaCCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCA
TTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTATCTCAAAGAAAAAAAGAAAATTTCT |
|---|
| Alignment of AA343986_21_198 to gnl|alu|HSU14573 |
1 gaaacctcatctccactaaaaatacaaaaattagccaggcgtggtcacatgcgcctgtaa 60
|||||| | |||| |||||||||||||||||||||| |||||||| | ||||||||||
104 gaaaccccgtctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaa 163
61 tcccagctactcgggcagctgagacaggagaatcacttgaacccaggaggcagaggttgc 120
||||||||||||||| |||||| |||||||||| ||||||||| |||||| ||||||||
164 tcccagctactcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgc 223
121 agtgagccgagatcacgccattgcactccagcctgggcaacaagagcaaaactctatctc 180
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||
224 agtgagccgagatcgcgccactgcactccagcctgggcaacaagagcgaaactccgtctc 283
181 aaa 183
|||
284 aaa 286
| Site name: | AA343986_21_202 |
|---|
| Site flanking region: | CCTCATCTCCACTAAAAATACAAAAATTAGCCAGGCGTGGTCACATGCGCCTGTAATCCCAGCTACTCGG
GCAGCTGAGACAGGAGAATCACTTGAACCCaGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCATTGC
ACTCCAGCCTGGGCAACAAGAGCAAAACTCTATCTCAAAGAAAAAAAGAAAATTTCTACAT |
|---|
| Alignment of AA343986_21_202 to gnl|alu|HSU14573 |
6 tctccactaaaaatacaaaaattagccaggcgtggtcacatgcgcctgtaatcccagcta 65
|||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||
113 tctctactaaaaatacaaaaattagccgggcgtggtggcgggcgcctgtaatcccagcta 172
66 ctcgggcagctgagacaggagaatcacttgaacccaggaggcagaggttgcagtgagccg 125
|||||| |||||| |||||||||| ||||||||| |||||| |||||||||||||||||
173 ctcgggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgcagtgagccg 232
126 agatcacgccattgcactccagcctgggcaacaagagcaaaactctatctcaaa 179
||||| ||||| |||||||||||||||||||||||||| |||||| |||||||
233 agatcgcgccactgcactccagcctgggcaacaagagcgaaactccgtctcaaa 286
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | NM014898,AB023178 |
|---|
| Multiple alignment | ATCCCAGCTACTCGGGCAGCTGAGACAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTG Chrom.19 NT_011109
ATCCCAGCTACTCGGGCAGCTGAGACAGGAGAATCACTTGGGCCCGGGAGGCAGAGGTTG NM014898
ATCCCAGCTACTCGGGCAGCTGAGACAGGAGAATCACTTGGGCCCGGGAGGCAGAGGTTG AB023178
CAGTGAGCCGAGATCACGCCATTGCA Chrom.19 NT_011109
CAGTGAGCCGAGATCACGCCATTGCA NM014898
CAGTGAGCCGAGATCACGCCATTGCA AB023178
|
|
|
|
|
|
|
|
|
|
| Sites: | AA343986_21_644 AA343986_21_671 Cytogenetic band: 19q13.13 |
|---|
| Site name: | AA343986_21_644 |
|---|
| Site flanking region: | TCTGCCTCCCGGGTTCAAGCCATTCTCCTCCCTCAGACTTCCGAGTGGCTGGGATTACAGGCGCCCGCCA
CCACACCAGGTTGATTTTTGTATTTTTAGTaGAGATGGGGTTTCACCATGTTGGCCAAGCTGGTCTCAAC
TCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAGGTGCTGGGATTACAGGCGTGAG |
|---|
| Alignment of AA343986_21_644 to gnl|alu|HSU14573 |
4 gcctcccgggttcaagccattctcctccctcagacttccgagtggctgggattacaggcg 63
||||||||||||||||| |||||||| |||||| || |||||| ||||||||||||||||
214 gcctcccgggttcaagcgattctcctgcctcagcctcccgagtagctgggattacaggcg 155
64 cccgccaccacaccaggttgatttttgtatttttagtagagatggggtttcaccatgttg 123
||||||||||| || || | |||||||||||||||||||||| |||||||||||||||||
154 cccgccaccacgcccggctaatttttgtatttttagtagagacggggtttcaccatgttg 95
124 gccaagctggtctc-aactcctgacctcaggtgatccacctgccttggcctcccaaggtg 182
|||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||| |||
94 gccaggctggtctcgaactcctgacctcaggtgatccacccgcctcggcctcccaaagtg 35
183 ctgggattacaggcgtgag 201
|||||||||||||||||||
34 ctgggattacaggcgtgag 16
| Site name: | AA343986_21_671 |
|---|
| Site flanking region: | CTCCCTCAGACTTCCGAGTGGCTGGGATTACAGGCGCCCGCCACCACACCAGGTTGATTTTTGTATTTTT
AGTAGAGATGGGGTTTCACCATGTTGGCCAaGCTGGTCTCAACTCCTGACCTCAGGTGATCCACCTGCCT
TGGCCTCCCAAGGTGCTGGGATTACAGGCGTGAGCCACCATGCCCGACTCTCACTTCATAT |
|---|
| Alignment of AA343986_21_671 to gnl|alu|HSU14573 |
4 cctcagacttccgagtggctgggattacaggcgcccgccaccacaccaggttgatttttg 63
|||||| || |||||| ||||||||||||||||||||||||||| || || | |||||||
187 cctcagcctcccgagtagctgggattacaggcgcccgccaccacgcccggctaatttttg 128
64 tatttttagtagagatggggtttcaccatgttggccaagctggtctc-aactcctgacct 122
||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||
127 tatttttagtagagacggggtttcaccatgttggccaggctggtctcgaactcctgacct 68
123 caggtgatccacctgccttggcctcccaaggtgctgggattacaggcgtgagccacc 179
||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||
67 caggtgatccacccgcctcggcctcccaaagtgctgggattacaggcgtgagccacc 11
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | NM014898,AB023178 |
|---|
| Multiple alignment | GCGCCCGCCACCACACCAGGTTGATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATG Chrom.19 NT_011109
GCGCCCGCCACCACACCAGGTTGATTTTTGTATTTTTAGTGGAGATGGGGTTTCACCATG NM014898
GCGCCCGCCACCACACCAGGTTGATTTTTGTATTTTTAGTGGAGATGGGGTTTCACCATG AB023178
TTGGCCAAGCTGGTCTCAACTCCTGACCTCAGGTGATCCACCTGCCTT Chrom.19 NT_011109
TTGGCCAGGCTGGTCTCAACTCCTGACCTCAGGTGATCCACCTGCCTC NM014898
TTGGCCAGGCTGGTCTCAACTCCTGACCTCAGGTGATCCACCTGCCTC AB023178
|
|
|
|
|
|
|
|
|
|
|
|---|
|
|---|
|
|---|
|
|---|
|
|---|
|
|---|
|
|---|
|
|---|
|
|---|
|
|---|
|
|---|
|
|---|
|
|---|