| Alignment of AA328836_21_415 to gnl|alu|L04210_HSAL003821 |
99 acagggtctgactctgtcctccaggccagagtccagtggtgcaatctcagctca 152
||||||||| |||||||| |||||| |||| |||||||||||||| ||||||
76 acagggtctcactctgtcacccaggctggagtgcagtggtgcaatcttagctca 23
| Site name: | AA328836_21_441 |
|---|
| Site flanking region: | GCCAGAACTGGACTCAGATTTCAGCCCCATCCCCAATGAAGAGCTTGAGTTTGAAGATTATACTTTTTTT
GAGACAGGGTCTGACTCTGTCCTCCAGGCCaGAGTCCAGTGGTGCAATCTCAGCTCACTGTAGCCTCAAC
CTGCCAGGTTGAAGTGAGCCTCCCATTTCAGCCTCCCAAGTAGCTGGGACTACAATTGTGA |
|---|
| Alignment of AA328836_21_441 to gnl|alu|HSU14567 |
71 gagacagggtctgactctgtcctccaggccagagtccagtggtgcaatctcagctcactg 130
|||||||||||| ||||||| |||||| |||| |||||| || ||| | ||||||||
282 gagacagggtctcgctctgtcgcccaggctggagtgcagtggcgcgatcacggctcactg 223
131 tagcctcaacctgccaggttgaagtgagcctcccatttcagcctcccaagtagctgggac 190
|||||| |||| || || | ||| || ||||| |||||||||| ||||||||||||
222 cagcctcgacctcccgggctcaagcgatcctcctgcctcagcctcccgagtagctgggac 163
191 taca 194
||||
162 taca 159
| Site name: | AA328836_21_462 |
|---|
| Site flanking region: | CAGCCCCATCCCCAATGAAGAGCTTGAGTTTGAAGATTATACTTTTTTTGAGACAGGGTCTGACTCTGTC
CTCCAGGCCAGAGTCCAGTGGTGCAATCTCaGCTCACTGTAGCCTCAACCTGCCAGGTTGAAGTGAGCCT
CCCATTTCAGCCTCCCAAGTAGCTGGGACTACAATTGTGAGCCACCATGCCAGGCTCATTG |
|---|
| Alignment of AA328836_21_462 to gnl|alu|HSU14567 |
50 gagacagggtctgactctgtcctccaggccagagtccagtggtgcaatctcagctcactg 109
|||||||||||| ||||||| |||||| |||| |||||| || ||| | ||||||||
282 gagacagggtctcgctctgtcgcccaggctggagtgcagtggcgcgatcacggctcactg 223
110 tagcctcaacctgccaggttgaagtgagcctcccatttcagcctcccaagtagctgggac 169
|||||| |||| || || | ||| || ||||| |||||||||| ||||||||||||
222 cagcctcgacctcccgggctcaagcgatcctcctgcctcagcctcccgagtagctgggac 163
170 taca 173
||||
162 taca 159
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | BF308356,AB072038,AA328836,AF337818,NM052884,BM544044,BG826221 |
|---|
| Multiple alignment | TGAAGAGCTTGAGTTTGAA.GATTATACTTTTTTTGAGACAGGG.TCTGACTCTGTCCTC Chrom.19 NT_011109
TGAAGAGCTTGAGTTTGAAGGA.TATACTTTTTTTGAGACAGGGCTCTGACTCTGTCCTC BF308356
TGAAGAGCTTGAGTTTGAA.GATTATACTTTTTTTGAGACAGGG.TCTGACTCTGTCCTC AB072038
TGAAGAGCTTGAGTTTGAA.GATTATACTTTTTTTGAGACAGGG.TCTGGCTCTGTCCTC AA328836
TGAAGAGCTTGAGTTTGAA.GATTATACTTTTTTTGAGACAGGG.TCTGACTCTGTCCTC AF337818
TGAAGAGCTTGAGTTTGAA.GATTATACTTTTTTTGAGACAGGG.TCTGACTCTGTCCTC NM052884
TGAAGAGCTTGAGTTTGAA.GATTATACTTTTTTTGAGACGGGG.TCTGACTCTGTCCTC BM544044
TGAAGAGCTTGAGTTTGAA.GATTATACTTGCTATGAGACAGGG.TCTGACTCTGTCCTC BG826221
CAGGCCAGAGTCCAGTGGTGCAATCTCAGCTCACTGTAGCCTCAACCT.GCCAGGTTGAA Chrom.19 NT_011109
CAGG.CGGGGTCCAGTGGTGCAATCTCAG.TCA.TGTAGCCTCAAACT.GCCAGGTTGAA BF308356
CAGGCCGGAGTCCA++++++++++++++++++++++++++++++++++++++++++++++ AB072038
CAGGCCGGAGTCCAGTGGTGCAATCTCGGCTCACTGTAGCCTCAACCT.GCCAGGTTGAA AA328836
CAGGCCGGAGTCCAGTGGTGCAATCTCGGCTCACTGTAGCCTCAACCT.GCCAGGTTGAA AF337818
CAGGCCGGAGTCCAGTGGTGCAATCTCGGCTCACTGTAGCCTCAACCT.GCCAGGTTGAA NM052884
CAGGCCAGAGTCCAGTGGTGCAATCTCGGCTCACTGTAGCCTCAACCTGGCCGGGTTGAA BM544044
CAGGCCGGGGTCCAGTGGTGCAATCTCAGCTCACTGTAGCCTCAATCT.GCCAGGTTGAA BG826221
.GTGAGCC Chrom.19 NT_011109
.GTGAGGC BF308356
.GTGAGCC AA328836
.GTGAGCC AF337818
.GTGAGCC NM052884
.GTGAGCC BM544044
CGTGAGCC BG826221
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| Sites: | AA328836_21_582 Cytogenetic band: 19q13.33 |
|---|
| Site name: | AA328836_21_582 |
|---|
| Site flanking region: | GCCTCAACCTGCCAGGTTGAAGTGAGCCTCCCATTTCAGCCTCCCAAGTAGCTGGGACTACAATTGTGAG
CCACCATGCCAGGCTCATTGTTATATTTTTaGTAGAGACAGGGTTTTGCCATGTTTCCCTGGCTGGTCTC
AGACTCCTGGGCTCAAGCAATCTGCCCGCCTCTGCCTCCCAAAGTGCTGGGATTACAGACG |
|---|
| Alignment of AA328836_21_582 to gnl|alu|HSU14567 |
36 tcagcctcccaagtagctgggactacaattgtgagccaccatgccaggctcattgttata 95
|||||||||| |||||||||||||||| | | ||||||| ||| |||| ||| || ||
185 tcagcctcccgagtagctgggactacaggcgcgcgccaccacgcccggctaatttttgta 126
96 tttttagtagagacagggttttgccatgtttccctggctggtctcagactcctgggctca 155
||||| |||||||| |||||| | ||||| ||| |||||||||| |||||||||||||
125 ttttttgtagagacggggtttcactatgttgcccaggctggtctcgaactcctgggctca 66
156 agcaatctgcccgcctctgcctcccaaagtgctgggattacag 198
|| ||| |||||||| |||||||||||||||||||||||||
65 agtgatcctcccgcctcggcctcccaaagtgctgggattacag 23
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | AF337818,NM052884 |
|---|
| Multiple alignment | GTGAG..CCACCA.T.GCCAGGCTCATTGTTATA.TTTTTAGTAGAGACAGGGTTTTGCC Chrom.19 NT_011109
GTGAG..CCACCA.T.GCCAGGCTCATTGTTGTA.TTTTTGGTAGAGACAGGGTTTTGCC AF337818
GTGAG..CCACCA.T.GCCAGGCTCATTGTTGTA.TTTTTGGTAGAGACAGGGTTTTGCC NM052884
ATGTTTCCCT.GGCTGGTCTC Chrom.19 NT_011109
ATGTTTCCCT.GGCTGGTCTC AF337818
ATGTTTCCCT.GGCTGGTCTC NM052884
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| Sites: | AA328836_21_623 Cytogenetic band: 19q13.33 |
|---|
| Site name: | AA328836_21_623 |
|---|
| Site flanking region: | CTCCCAAGTAGCTGGGACTACAATTGTGAGCCACCATGCCAGGCTCATTGTTATATTTTTAGTAGAGACA
GGGTTTTGCCATGTTTCCCTGGCTGGTCTCaGACTCCTGGGCTCAAGCAATCTGCCCGCCTCTGCCTCCC
AAAGTGCTGGGATTACAGACGTGAGCCACCACAGCTGGCTGAAGATTATACTTTCAATTCA |
|---|
| Alignment of AA328836_21_623 to gnl|alu|HSU14567 |
1 ctcccaagtagctgggactacaattgtgagccaccatgccaggctcattgttatattttt 60
||||| |||||||||||||||| | | ||||||| ||| |||| ||| || |||||||
180 ctcccgagtagctgggactacaggcgcgcgccaccacgcccggctaatttttgtattttt 121
61 agtagagacagggttttgccatgtttccctggctggtctcagactcctgggctcaagcaa 120
|||||||| |||||| | ||||| ||| |||||||||| ||||||||||||||| |
120 tgtagagacggggtttcactatgttgcccaggctggtctcgaactcctgggctcaagtga 61
121 tctgcccgcctctgcctcccaaagtgctgggattacagacgtgagccacc 170
|| |||||||| ||||||||||||||||||||||||| |||||||||||
60 tcctcccgcctcggcctcccaaagtgctgggattacaggcgtgagccacc 11
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | AF337818,NM052884 |
|---|
| Multiple alignment | GTAGAGACAGGGTTTTGCCATGTTTCCCT.GGCTGGTCTCAGACTCCT.GGGCTCAAGCA Chrom.19 NT_011109
GTAGAGACAGGGTTTTGCCATGTTTCCCT.GGCTGGTCTCGGACTCCT.GGGCTCAAGCA AF337818
GTAGAGACAGGGTTTTGCCATGTTTCCCT.GGCTGGTCTCGGACTCCT.GGGCTCAAGCA NM052884
ATCTG.CCCGCCTCTGCCTCC Chrom.19 NT_011109
ATCTG.CCCGCCTCTGCCTCC AF337818
ATCTG.CCCGCCTCTGCCTCC NM052884
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| Sites: | AA328836_21_667 AA328836_21_680 Cytogenetic band: 19q13.33 |
|---|
| Site name: | AA328836_21_667 |
|---|
| Site flanking region: | GCTCATTGTTATATTTTTAGTAGAGACAGGGTTTTGCCATGTTTCCCTGGCTGGTCTCAGACTCCTGGGC
TCAAGCAATCTGCCCGCCTCTGCCTCCCAAaGTGCTGGGATTACAGACGTGAGCCACCACAGCTGGCTGA
AGATTATACTTTCAATTCAGAGCGAGTTTGAAGATGACACTTTGAGGCATCGTGTCTATGG |
|---|
| Alignment of AA328836_21_667 to gnl|alu|HSU14567 |
12 tatttttagtagagacagggttttgccatgtttccctggctggtctcagactcctgggct 71
||||||| |||||||| |||||| | ||||| ||| |||||||||| |||||||||||
127 tattttttgtagagacggggtttcactatgttgcccaggctggtctcgaactcctgggct 68
72 caagcaatctgcccgcctctgcctcccaaagtgctgggattacagacgtgagccacc 128
|||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||
67 caagtgatcctcccgcctcggcctcccaaagtgctgggattacaggcgtgagccacc 11
| Site name: | AA328836_21_680 |
|---|
| Site flanking region: | ATTTTTAGTAGAGACAGGGTTTTGCCATGTTTCCCTGGCTGGTCTCAGACTCCTGGGCTCAAGCAATCTG
CCCGCCTCTGCCTCCCAAAGTGCTGGGATTaCAGACGTGAGCCACCACAGCTGGCTGAAGATTATACTTT
CAATTCAGAGCGAGTTTGAAGATGACACTTTGAGGCATCGTGTCTATGGTTCATTACTACA |
|---|
| Alignment of AA328836_21_680 to gnl|alu|HSU14567 |
1 atttttagtagagacagggttttgccatgtttccctggctggtctcagactcctgggctc 60
|||||| |||||||| |||||| | ||||| ||| |||||||||| ||||||||||||
126 attttttgtagagacggggtttcactatgttgcccaggctggtctcgaactcctgggctc 67
61 aagcaatctgcccgcctctgcctcccaaagtgctgggattacagacgtgagccacc 116
||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||
66 aagtgatcctcccgcctcggcctcccaaagtgctgggattacaggcgtgagccacc 11
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | AF337818,BX324895,NM052884,CD369505 |
|---|
| Multiple alignment | TCCT.GGGCTCAAGCAATCTG.CCCGCCTCTGCCTCCCAAAGTGC.TGGGATTACAGACG Chrom.19 NT_011109
TCCT.GGGCTCAAGCAATCTG.CCCGCCTCTGCCTCCCAAGGTGC.TGGGATTGCAGACG AF337818
TCCTGGGGTTNAAGNAATNTGCCCCGCCTNTGCCTCCCAAGGTGCTTGGGNTTACAGACG BX324895
TCCT.GGGCTCAAGCAATCTG.CCCGCCTCTGCCTCCCAAGGTGC.TGGGATTGCAGACG NM052884
TCCT.GGGCTCAAGCAATCTG.CCCGCCTCTGCCTCCCAAGGTGC.TGGGATTGCAGACG CD369505
T.GAGCCACCACAGCTGGCTGAAGATTAT.ACTT Chrom.19 NT_011109
T.GAGCCACCACAGCTGGCTGAAGATTAT.ACTT AF337818
TGGAGCCACCACCGCTGGCTGAAGATTATCACTT BX324895
T.GAGCCACCACAGCTGGCTGAAGATTAT.ACTT NM052884
T.GAGCCACCACAGCTGGCTGAAGATTAT.ACTT CD369505
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| Sites: | AA328836_21_1001 AA328836_21_1009 AA328836_21_1010 AA328836_21_1016 Cytogenetic band: 19q13.33 |
|---|
| Site name: | AA328836_21_1001 |
|---|
| Site flanking region: | ACCATGCTCTTCCTTCAGAAGAGGGAGAGTGAGAGGACCAAGTCCAAGTGGTTCCCATTTGAACATTTAA
AAAAAAAAAAAAGGCTGGGCATGGTGGCTCaCGCCTGTAATCTCAACACTTTGGGAGGCTGAAGTGGGTG
GATCACAAGTCAGGAGTTCAAGACCAGCCTGGGCAAGATGGTGAAACCCCATCTCTACTAA |
|---|
| Alignment of AA328836_21_1001 to gnl|alu|HSU14573 |
93 ggtggctcacgcctgtaatctcaacactttgggaggctgaagtgggtggatcac---aag 149
|||||||||||||||||||| || ||||||||||||| || | ||||||||||| | |
11 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgagg 70
150 tcaggagttcaagaccagcctgggcaagatggtgaaaccccatctctactaa 201
|||||||||| |||||||||||| ||| ||||||||||||| ||||||||||
71 tcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaa 122
| Site name: | AA328836_21_1009 |
|---|
| Site flanking region: | CTTCCTTCAGAAGAGGGAGAGTGAGAGGACCAAGTCCAAGTGGTTCCCATTTGAACATTTAAAAAAAAAA
AAAAGGCTGGGCATGGTGGCTCACGCCTGTaATCTCAACACTTTGGGAGGCTGAAGTGGGTGGATCACAA
GTCAGGAGTTCAAGACCAGCCTGGGCAAGATGGTGAAACCCCATCTCTACTAAAAATACAA |
|---|
| Alignment of AA328836_21_1009 to gnl|alu|HSU14573 |
85 ggtggctcacgcctgtaatctcaacactttgggaggctgaagtgggtggatcac---aag 141
|||||||||||||||||||| || ||||||||||||| || | ||||||||||| | |
11 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgagg 70
142 tcaggagttcaagaccagcctgggcaagatggtgaaaccccatctctactaaaaatacaa 201
|||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||
71 tcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaa 130
| Site name: | AA328836_21_1010 |
|---|
| Site flanking region: | TTCCTTCAGAAGAGGGAGAGTGAGAGGACCAAGTCCAAGTGGTTCCCATTTGAACATTTAAAAAAAAAAA
AAAGGCTGGGCATGGTGGCTCACGCCTGTAaTCTCAACACTTTGGGAGGCTGAAGTGGGTGGATCACAAG
TCAGGAGTTCAAGACCAGCCTGGGCAAGATGGTGAAACCCCATCTCTACTAAAAATACAAA |
|---|
| Alignment of AA328836_21_1010 to gnl|alu|HSU14573 |
84 ggtggctcacgcctgtaatctcaacactttgggaggctgaagtgggtggatcac---aag 140
|||||||||||||||||||| || ||||||||||||| || | ||||||||||| | |
11 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgagg 70
141 tcaggagttcaagaccagcctgggcaagatggtgaaaccccatctctactaaaaatacaa 200
|||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||
71 tcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaa 130
201 a 201
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131 a 131
| Site name: | AA328836_21_1016 |
|---|
| Site flanking region: | CAGAAGAGGGAGAGTGAGAGGACCAAGTCCAAGTGGTTCCCATTTGAACATTTAAAAAAAAAAAAAAGGC
TGGGCATGGTGGCTCACGCCTGTAATCTCAaCACTTTGGGAGGCTGAAGTGGGTGGATCACAAGTCAGGA
GTTCAAGACCAGCCTGGGCAAGATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAG |
|---|
| Alignment of AA328836_21_1016 to gnl|alu|HSU14573 |
78 ggtggctcacgcctgtaatctcaacactttgggaggctgaagtgggtggatcac---aag 134
|||||||||||||||||||| || ||||||||||||| || | ||||||||||| | |
11 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgagg 70
135 tcaggagttcaagaccagcctgggcaagatggtgaaaccccatctctactaaaaatacaa 194
|||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||
71 tcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaa 130
195 aaattag 201
|||||||
131 aaattag 137
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | AF337818,BX324895,NM052884 |
|---|
| Multiple alignment | GAACATTTAAAAAAAAAAAAAAGGCTGGGCATGGTGGCTCACGCCTGTAATCTCAACACT Chrom.19 NT_011109
GAACATTTAAAAAAAAAAAAAAGGCTGGGCATGGTGGCTCACGCCTGTGGTCTCAGCACT AF337818
GAACATTTAAAAAAAAAAAAAAGGCTGGGCATGGT.GCTCGCGCCTGTAGTCTCAACACT BX324895
GAACATTTAAAAAAAAAAAAAAGGCTGGGCATGGTGGCTCACGCCTGTGGTCTCAGCACT NM052884
TTGGGAGGCTGAAGTGGGTGGATCACAAGTCAGGAG Chrom.19 NT_011109
TTGGGAGGCTGAAGTGGGTGGATCACAAGTCAGGAG AF337818
TTGGGAGGCTGAAGTGGGTGGATCACAAGTCAGGAG BX324895
TTGGGAGGCTGAAGTGGGTGGATCACAAGTCAGGAG NM052884
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| Sites: | AA328836_21_1060 Cytogenetic band: 19q13.33 |
|---|
| Site name: | AA328836_21_1060 |
|---|
| Site flanking region: | TGAACATTTAAAAAAAAAAAAAAGGCTGGGCATGGTGGCTCACGCCTGTAATCTCAACACTTTGGGAGGC
TGAAGTGGGTGGATCACAAGTCAGGAGTTCaAGACCAGCCTGGGCAAGATGGTGAAACCCCATCTCTACT
AAAAATACAAAAATTAGCCGGGCATGGTGGCGGGCGCCTAAAATCCCAGCTACTCGGGAGA |
|---|
| Alignment of AA328836_21_1060 to gnl|alu|HSU14573 |
34 ggtggctcacgcctgtaatctcaacactttgggaggctgaagtgggtggatcac---aag 90
|||||||||||||||||||| || ||||||||||||| || | ||||||||||| | |
11 ggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggtggatcacctgagg 70
91 tcaggagttcaagaccagcctgggcaagatggtgaaaccccatctctactaaaaatacaa 150
|||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||
71 tcaggagttcgagaccagcctggccaacatggtgaaaccccgtctctactaaaaatacaa 130
151 aaattagccgggcatggtggcgggcgcctaaaatcccagctactcgggag 200
||||||||||||| ||||||||||||||| |||||||||||||||||||
131 aaattagccgggcgtggtggcgggcgcctgtaatcccagctactcgggag 180
| Genbank sequences that undergo editing in this site(s) |
|---|
| Sequence list: | AF337818,NM052884 |
|---|
| Multiple alignment | TTTGGGAGGCTGAAGTGGGTGGATCACAAGTCAGGAGTTCAAGACCAGCCTGGGCAAGAT Chrom.19 NT_011109
TTTGGGAGGCTGAAGTGGGTGGATCACAAGTCAGGAGTTCGAGACCAGCCTGGGCAAGAT AF337818
TTTGGGAGGCTGAAGTGGGTGGATCACAAGTCAGGAGTTCGAGACCAGCCTGGGCAAGAT NM052884
GGTGAAACCCCATCTCTACTA Chrom.19 NT_011109
GGTGAAACCCCATCTCTACTG AF337818
GGTGAAACCCCATCTCTACTG NM052884
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